BLASTX 2.1.2 [Oct-19-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AW065755 614061B04.y1
(615 letters)
Database: mypept
28 sequences; 11,685 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
gi|3128228|gb|AAC26708.1| (AC004077) 60S ribosomal protein L18A ... 331 4e-94
gi|3355660|emb|CAA08791.1| (AJ009692) ribosomal protein L18a [Po... 190 9e-52
gi|401845|gb|AAC18781.1| (L05093) ribosomal protein L18a [Homo s... 189 2e-51
gi|3702270|gb|AAC62828.1| (AC005796) ribosomal protein L18a [Hom... 189 2e-51
gi|416554|emb|CAA32385.1| (X14181) ribosomal protein L18a (AA 1-... 188 3e-51
>gi|3128228|gb|AAC26708.1| (AC004077) 60S ribosomal protein L18A [Arabidopsis thaliana]
Length = 178
Score = 331 bits (839), Expect = 4e-94
Identities = 156/178 (87%), Positives = 168/178 (93%)
Frame = +3
Query: 63 MVAHRFHQYQVVGRALPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 242
M A RFHQYQVVGRALPT D PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM
Sbjct: 1 MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
Query: 243 LAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRS 422
LAINEI+E+NPTTIKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR
Sbjct: 61 LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120
Query: 423 PCIQIIKTATVHFKLCKRDNTKQFHNSEIKFPLVYRKVRPPTRKLRTTFKASRPNLFM 596
PCIQIIKTATV KLCKR++TKQFHNS+IKFPLV+RKVRPP+RKL+TT+KA++PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178
>gi|3355660|emb|CAA08791.1| (AJ009692) ribosomal protein L18a [Podocoryne carnea]
Length = 174
Score = 190 bits (478), Expect = 9e-52
Identities = 79/171 (46%), Positives = 129/171 (75%)
Frame = +3
Query: 84 QYQVVGRALPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 263
+Y+++GR LP+ + +YRM+++A + V AKS+FWY+++KLKK+KK+ G+++ +E+F
Sbjct: 7 EYKIIGRRLPSEKTPNTPLYRMRIFAPDVVSAKSRFWYYMKKLKKLKKTVGEVVMCSEVF 66
Query: 264 ERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIK 443
+++PTT+KN+G+W+RY SR+G HNMY+EYRD T+ GAV Q Y +MA+RHR R+ +QI+K
Sbjct: 67 DKSPTTVKNFGVWIRYNSRSGTHNMYREYRDVTVTGAVTQCYTDMAARHRARASSVQILK 126
Query: 444 TATVHFKLCKRDNTKQFHNSEIKFPLVYRKVRPPTRKLRTTFKASRPNLFM 596
V C+R + KQ HNS+++FP+ +R +R + R+TF+A RP+ F+
Sbjct: 127 VEEVPSNKCRRPHVKQMHNSKMRFPMTHRVMR---SQFRSTFQAKRPHTFL 174
>gi|401845|gb|AAC18781.1| (L05093) ribosomal protein L18a [Homo sapiens]
Length = 176
Score = 189 bits (475), Expect = 2e-51
Identities = 87/170 (51%), Positives = 121/170 (71%)
Frame = +3
Query: 84 QYQVVGRALPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 263
+Y+VVGR LPTP P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++ ++F
Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68
Query: 264 ERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIK 443
E++P +KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI+K
Sbjct: 69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128
Query: 444 TATVHFKLCKRDNTKQFHNSEIKFPLVYRKVRPPTRKLRTTFKASRPNLF 593
+ C+R KQFH+S+IKFPL +R +R R+ + F RPN F
Sbjct: 129 VEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>gi|3702270|gb|AAC62828.1| (AC005796) ribosomal protein L18a [Homo sapiens]
Length = 176
Score = 189 bits (475), Expect = 2e-51
Identities = 87/170 (51%), Positives = 121/170 (71%)
Frame = +3
Query: 84 QYQVVGRALPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 263
+Y+VVGR LPTP P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++ ++F
Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68
Query: 264 ERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIK 443
E++P +KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI+K
Sbjct: 69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128
Query: 444 TATVHFKLCKRDNTKQFHNSEIKFPLVYRKVRPPTRKLRTTFKASRPNLF 593
+ C+R KQFH+S+IKFPL +R +R R+ + F RPN F
Sbjct: 129 VEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>gi|416554|emb|CAA32385.1| (X14181) ribosomal protein L18a (AA 1-175) [Rattus rattus]
Length = 176
Score = 188 bits (473), Expect = 3e-51
Identities = 87/170 (51%), Positives = 121/170 (71%)
Frame = +3
Query: 84 QYQVVGRALPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 263
+Y+VVGR LPTP P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++ ++F
Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68
Query: 264 ERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIK 443
E++P +KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI+K
Sbjct: 69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128
Query: 444 TATVHFKLCKRDNTKQFHNSEIKFPLVYRKVRPPTRKLRTTFKASRPNLF 593
+ C+R KQFH+S+IKFPL +R +R R+ + F RPN F
Sbjct: 129 VEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
Database: mypept
Posted date: Jan 12, 2001 5:58 PM
Number of letters in database: 11,685
Number of sequences in database: 28
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12014
Number of Sequences: 28
Number of extensions: 223
Number of successful extensions: 8
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 205
length of database: 11,685
effective HSP length: 29
effective length of query: 175
effective length of database: 10,873
effective search space: 1902775
effective search space used: 1902775
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 128 (54.3 bits)
BLASTX 2.1.2 [Oct-19-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AI395890 487001e03.x1
(396 letters)
Database: mypept
28 sequences; 11,685 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
gi|1755166|gb|AAB51572.1| (U75194) germin-like protein [Arabidop... 127 7e-33
gi|6689034|emb|CAB65369.1| (AJ250832) germin-like protein [Pisum... 125 2e-32
gi|6714408|gb|AAF26097.1|AC012393_23 (AC012393) germin-like prot... 125 2e-32
gi|6671962|gb|AAF23221.1|AC013454_8 (AC013454) germin-like prote... 125 2e-32
gi|5869975|emb|CAB55559.1| (AJ237943) germin-like protein [Triti... 121 4e-31
gi|1755160|gb|AAB51569.1| (U75191) germin-like protein [Arabidop... 120 5e-31
gi|3047078|gb|AAC13591.1| (AF058914) similar to 11-S seed storag... 102 2e-25
>gi|1755166|gb|AAB51572.1| (U75194) germin-like protein [Arabidopsis thaliana]
Length = 222
Score = 127 bits (315), Expect = 7e-33
Identities = 68/113 (60%), Positives = 79/113 (69%), Gaps = 2/113 (1%)
Frame = -2
Query: 335 LFISMLLAMACSCAIASDPSLLQDFCVA--DKTSQVRVNGFACKDAKDVVAEDFFFSGLH 162
L + L A+ S A A DPS LQDFCVA D + V VNG CKD K AEDFFFSGL+
Sbjct: 7 LILITLSALVISFAEAYDPSPLQDFCVAIDDLKNGVFVNGKFCKDPKQAKAEDFFFSGLN 66
Query: 161 KAGNTSNRQGSAVAAANVAQIPGLNTMGLSMVRIDYAPKGLNPQHTRPRNTEM 3
+AG+T+N+ S V NV QIPGLNTMG+S+VRIDYAP G NP HT PR TE+
Sbjct: 67 QAGSTNNKVRSNVTTVNVDQIPGLNTMGISLVRIDYAPYGQNPPHTHPRATEI 119
>gi|6689034|emb|CAB65369.1| (AJ250832) germin-like protein [Pisum sativum]
Length = 217
Score = 125 bits (312), Expect = 2e-32
Identities = 63/114 (55%), Positives = 77/114 (67%)
Frame = -2
Query: 344 RLFLFISMLLAMACSCAIASDPSLLQDFCVADKTSQVRVNGFACKDAKDVVAEDFFFSGL 165
+L + +++ + A A+D LQD CVAD S + VNGFACK A +V AEDFF + L
Sbjct: 2 KLIAVLLLVVLATATTATAADADALQDLCVADYASVILVNGFACKPASNVTAEDFFSNLL 61
Query: 164 HKAGNTSNRQGSAVAAANVAQIPGLNTMGLSMVRIDYAPKGLNPQHTRPRNTEM 3
K G T+N GS V ANV +IPGLNT+G+SM RIDYAP GLNP HT PR TEM
Sbjct: 62 VKQGATNNTFGSLVTGANVQRIPGLNTLGVSMARIDYAPGGLNPPHTHPRATEM 115
>gi|6714408|gb|AAF26097.1|AC012393_23 (AC012393) germin-like protein [Arabidopsis thaliana]
Length = 229
Score = 125 bits (312), Expect = 2e-32
Identities = 69/115 (60%), Positives = 80/115 (69%), Gaps = 1/115 (0%)
Frame = -2
Query: 344 RLFLFISMLLAMACSCAIASDPSLLQDFCVA-DKTSQVRVNGFACKDAKDVVAEDFFFSG 168
R + ++LLA+A S DPS LQDFCVA D S V VNG CKD K V AEDFF SG
Sbjct: 6 RFLVAKAILLALASSFVSCYDPSPLQDFCVAVDDASGVFVNGKFCKDPKYVKAEDFFTSG 65
Query: 167 LHKAGNTSNRQGSAVAAANVAQIPGLNTMGLSMVRIDYAPKGLNPQHTRPRNTEM 3
L+ AGNT NR GS V NV +IPGLNT+G+S+VRID+AP G NP HT PR TE+
Sbjct: 66 LNIAGNTINRVGSNVTNVNVDKIPGLNTLGVSLVRIDFAPGGQNPPHTHPRATEI 120
>gi|6671962|gb|AAF23221.1|AC013454_8 (AC013454) germin-like protein [Arabidopsis thaliana]
Length = 229
Score = 125 bits (312), Expect = 2e-32
Identities = 69/115 (60%), Positives = 80/115 (69%), Gaps = 1/115 (0%)
Frame = -2
Query: 344 RLFLFISMLLAMACSCAIASDPSLLQDFCVA-DKTSQVRVNGFACKDAKDVVAEDFFFSG 168
R + ++LLA+A S DPS LQDFCVA D S V VNG CKD K V AEDFF SG
Sbjct: 6 RFLVAKAILLALASSFVSCYDPSPLQDFCVAVDDASGVFVNGKFCKDPKYVKAEDFFTSG 65
Query: 167 LHKAGNTSNRQGSAVAAANVAQIPGLNTMGLSMVRIDYAPKGLNPQHTRPRNTEM 3
L+ AGNT NR GS V NV +IPGLNT+G+S+VRID+AP G NP HT PR TE+
Sbjct: 66 LNIAGNTINRVGSNVTNVNVDKIPGLNTLGVSLVRIDFAPGGQNPPHTHPRATEI 120
>gi|5869975|emb|CAB55559.1| (AJ237943) germin-like protein [Triticum aestivum]
Length = 229
Score = 121 bits (300), Expect = 4e-31
Identities = 64/118 (54%), Positives = 76/118 (64%)
Frame = -2
Query: 356 MAIRRLFLFISMLLAMACSCAIASDPSLLQDFCVADKTSQVRVNGFACKDAKDVVAEDFF 177
MA FL ++ LLA+ A ASDPS LQDFCVAD S VRVNGF CK+ +V A+DFF
Sbjct: 1 MASSSSFLLLAALLALVSWQATASDPSPLQDFCVADMNSPVRVNGFVCKNPMEVNADDFF 60
Query: 176 FSGLHKAGNTSNRQGSAVAAANVAQIPGLNTMGLSMVRIDYAPKGLNPQHTRPRNTEM 3
+ N+ GS V NV QI GLNT+G+S+ RIDYAP G NP HT PR TE+
Sbjct: 61 KAANLDKPKMPNKVGSNVTLINVMQIAGLNTLGISIARIDYAPLGQNPPHTHPRATEI 118
>gi|1755160|gb|AAB51569.1| (U75191) germin-like protein [Arabidopsis thaliana]
Length = 208
Score = 120 bits (299), Expect = 5e-31
Identities = 57/107 (53%), Positives = 74/107 (68%)
Frame = -2
Query: 323 MLLAMACSCAIASDPSLLQDFCVADKTSQVRVNGFACKDAKDVVAEDFFFSGLHKAGNTS 144
+L ++ + ++DP +LQD CVAD S +++NGF CKDA V + DFF GL K G T+
Sbjct: 11 LLTTVSFFISSSADPDMLQDLCVADLPSGIKINGFPCKDAATVTSADFFSQGLAKPGLTN 70
Query: 143 NRQGSAVAAANVAQIPGLNTMGLSMVRIDYAPKGLNPQHTRPRNTEM 3
N G+ V ANV IPGLNT+G+S+ RIDYAP GLNP HT PR TE+
Sbjct: 71 NTFGALVTGANVMTIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEV 117
>gi|3047078|gb|AAC13591.1| (AF058914) similar to 11-S seed storage proteins (Pfam:
Seedstore_11s.hmm, score: 19.95) [Arabidopsis thaliana]
Length = 266
Score = 102 bits (251), Expect = 2e-25
Identities = 50/113 (44%), Positives = 66/113 (58%)
Frame = -2
Query: 341 LFLFISMLLAMACSCAIASDPSLLQDFCVADKTSQVRVNGFACKDAKDVVAEDFFFSGLH 162
LFL + + L + CS I ++ V+VNG+ CKD+ + EDF+F GL
Sbjct: 69 LFLLVKIYLTVFCSLLITNEA--------------VKVNGYTCKDSTQITPEDFYFKGLA 114
Query: 161 KAGNTSNRQGSAVAAANVAQIPGLNTMGLSMVRIDYAPKGLNPQHTRPRNTEM 3
T+ GS V ANV ++PGLNT+GLSM RIDYAP GLNP H PR +E+
Sbjct: 115 NIAATNTSTGSVVTGANVEKLPGLNTLGLSMSRIDYAPNGLNPPHVHPRASEI 167
Database: mypept
Posted date: Jan 12, 2001 5:58 PM
Number of letters in database: 11,685
Number of sequences in database: 28
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7062
Number of Sequences: 28
Number of extensions: 101
Number of successful extensions: 14
Number of sequences better than 1.0e-10: 14
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 8
length of query: 132
length of database: 11,685
effective HSP length: 27
effective length of query: 104
effective length of database: 10,929
effective search space: 1136616
effective search space used: 1136616
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 126 (53.5 bits)
BLASTX 2.1.2 [Oct-19-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AI395964 487010B12.x1
(393 letters)
Database: mypept
28 sequences; 11,685 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7629993|emb|CAB88335.1| (AL132960) histone H4-like protein [A... 121 3e-31
gi|7339494|emb|CAB82817.1| (AL162459) Histone H4-like protein [A... 121 3e-31
gi|6522611|emb|CAB62023.1| (AL133298) histone H4-like protein [A... 121 3e-31
gi|498898|gb|AAA86948.1| (U10042) histone H4 homolog [Pisum sati... 121 3e-31
gi|3927823|gb|AAC79580.1| (AC005727) histone H4 [Arabidopsis tha... 121 3e-31
>gi|7629993|emb|CAB88335.1| (AL132960) histone H4-like protein [Arabidopsis thaliana]
Length = 103
Score = 121 bits (301), Expect = 3e-31
Identities = 60/60 (100%), Positives = 60/60 (100%)
Frame = -2
Query: 392 VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 213
VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 44 VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
>gi|7339494|emb|CAB82817.1| (AL162459) Histone H4-like protein [Arabidopsis thaliana]
Length = 103
Score = 121 bits (301), Expect = 3e-31
Identities = 60/60 (100%), Positives = 60/60 (100%)
Frame = -2
Query: 392 VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 213
VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 44 VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
>gi|6522611|emb|CAB62023.1| (AL133298) histone H4-like protein [Arabidopsis thaliana]
Length = 103
Score = 121 bits (301), Expect = 3e-31
Identities = 60/60 (100%), Positives = 60/60 (100%)
Frame = -2
Query: 392 VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 213
VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 44 VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
>gi|498898|gb|AAA86948.1| (U10042) histone H4 homolog [Pisum sativum]
Length = 103
Score = 121 bits (301), Expect = 3e-31
Identities = 60/60 (100%), Positives = 60/60 (100%)
Frame = -2
Query: 392 VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 213
VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 44 VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
>gi|3927823|gb|AAC79580.1| (AC005727) histone H4 [Arabidopsis thaliana]
Length = 103
Score = 121 bits (301), Expect = 3e-31
Identities = 60/60 (100%), Positives = 60/60 (100%)
Frame = -2
Query: 392 VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 213
VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 44 VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
Database: mypept
Posted date: Jan 12, 2001 5:58 PM
Number of letters in database: 11,685
Number of sequences in database: 28
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4264
Number of Sequences: 28
Number of extensions: 66
Number of successful extensions: 5
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 131
length of database: 11,685
effective HSP length: 27
effective length of query: 103
effective length of database: 10,929
effective search space: 1125687
effective search space used: 1125687
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 126 (53.5 bits)
BLASTX 2.1.2 [Oct-19-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AI600608 486065G09.x1
(347 letters)
Database: mypept
28 sequences; 11,685 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
gi|168511|gb|AAA33479.1| (M60526) protein cdc2 kinase [Zea mays] 61 5e-19
gi|20343|emb|CAA42922.1| (X60374) Rcdc2-1 [Oryza sativa] 61 1e-18
>gi|168511|gb|AAA33479.1| (M60526) protein cdc2 kinase [Zea mays]
Length = 294
Score = 60.5 bits (144), Expect(2) = 5e-19
Identities = 28/29 (96%), Positives = 29/29 (99%)
Frame = -2
Query: 109 KMLRYEPSKRITARQALEHEYFKDLEMVQ 23
KMLRYEPSKRITARQALEHEYFKDLE+VQ
Sbjct: 266 KMLRYEPSKRITARQALEHEYFKDLEVVQ 294
Score = 40.6 bits (93), Expect(2) = 5e-19
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = -1
Query: 275 YPMPSLQDLATIVPNLEPAGLDLLS 201
+P QDLAT+VPNL+PAGLDLLS
Sbjct: 241 FPRWQAQDLATVVPNLDPAGLDLLS 265
>gi|20343|emb|CAA42922.1| (X60374) Rcdc2-1 [Oryza sativa]
Length = 294
Score = 60.9 bits (145), Expect(2) = 1e-18
Identities = 28/29 (96%), Positives = 29/29 (99%)
Frame = -2
Query: 109 KMLRYEPSKRITARQALEHEYFKDLEMVQ 23
KMLRYEP+KRITARQALEHEYFKDLEMVQ
Sbjct: 266 KMLRYEPNKRITARQALEHEYFKDLEMVQ 294
Score = 38.7 bits (88), Expect(2) = 1e-18
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = -1
Query: 275 YPMPSLQDLATIVPNLEPAGLDLLS 201
+P QDLATIVP L+PAGLDLLS
Sbjct: 241 FPKWQAQDLATIVPTLDPAGLDLLS 265
Database: mypept
Posted date: Jan 12, 2001 5:58 PM
Number of letters in database: 11,685
Number of sequences in database: 28
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6503
Number of Sequences: 28
Number of extensions: 114
Number of successful extensions: 4
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 115
length of database: 11,685
effective HSP length: 27
effective length of query: 88
effective length of database: 10,929
effective search space: 961752
effective search space used: 961752
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 125 (53.1 bits)
BLASTX 2.1.2 [Oct-19-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AW065632 614056E04.y1
(581 letters)
Database: mypept
28 sequences; 11,685 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
gi|3822036|gb|AAC69757.1| (AF072326) endo-1,3-1,4-beta-D-glucana... 270 5e-88
gi|595535|gb|AAC04982.1| (U12980) Yal049cp [Saccharomyces cerevi... 79 4e-18
>gi|3822036|gb|AAC69757.1| (AF072326) endo-1,3-1,4-beta-D-glucanase [Zea mays]
Length = 303
Score = 270 bits (682), Expect(2) = 5e-88
Identities = 128/132 (96%), Positives = 129/132 (96%)
Frame = +3
Query: 6 DKVAKAGYFVVGPDFLKGDYLDDKKNFMEWLEAHSPVKAAEDAKPLFAALKKEGKSVAGG 185
DKVAKAGYFVV PDFLKGDYLDDKKNF EWLEAHSPVKAAEDAKPLFAALKKEGKSVA G
Sbjct: 90 DKVAKAGYFVVVPDFLKGDYLDDKKNFTEWLEAHSPVKAAEDAKPLFAALKKEGKSVAVG 149
Query: 186 GYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRF 365
GYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRF
Sbjct: 150 GYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRF 209
Query: 366 VHVLRERHEVPY 401
VHVLRERHEVP+
Sbjct: 210 VHVLRERHEVPF 221
Score = 63.2 bits (151), Expect(2) = 5e-88
Identities = 29/46 (63%), Positives = 31/46 (67%)
Frame = +2
Query: 440 LQVQHHRPFRRQDRRDGPRLHGXXXXXXXXXXXXCTAPTRLNSINH 577
L+ +H PFRRQDRRDGPRLHG CTAPTRLNSINH
Sbjct: 213 LRERHEVPFRRQDRRDGPRLHGQLVQQAPQLNEACTAPTRLNSINH 258
>gi|595535|gb|AAC04982.1| (U12980) Yal049cp [Saccharomyces cerevisiae]
Length = 246
Score = 78.8 bits (191), Expect = 4e-18
Identities = 57/184 (30%), Positives = 81/184 (43%), Gaps = 8/184 (4%)
Frame = +3
Query: 3 ADKVAKAGYFVVGPDFLKGDYLDDKKNFME--WLEAHSP--VKAAEDAKPLFAALKKEGK 170
ADK A AGY V PD L GD + K W + HSP K D L+ + K
Sbjct: 63 ADKFASAGYMVFVPDILFGDAISSDKPIDRDAWFQRHSPEVTKKIVDGFMKLLKLEYDPK 122
Query: 171 SVAGGGYCWGGKLSVE--VGKTSDVKAVCLSHPYSVTADDMKEV--KWPIEILGAQNDTT 338
+ GYC+G K +V+ G A ++HP V+ ++++ + K PI I A+ D
Sbjct: 123 FIGVVGYCFGAKFAVQHISGDGGLANAAAIAHPSFVSIEEIEAIDSKKPILISAAEEDHI 182
Query: 339 TPPKEVYRFVHVLRERHEVPYYAKIFQGVEHGFACRYNTTDPFAVKTAETXLAYMVNWXN 518
P + L++ H Y +F GV HGFA R + + P E L + W N
Sbjct: 183 FPANLRHLTEEKLKDNHAT-YQLDLFSGVAHGFAARGDISIPAVKYAKEKVLLDQIYWFN 241
Query: 519 KHLN 530
N
Sbjct: 242 HFSN 245
Database: mypept
Posted date: Jan 12, 2001 5:58 PM
Number of letters in database: 11,685
Number of sequences in database: 28
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9921
Number of Sequences: 28
Number of extensions: 179
Number of successful extensions: 5
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 193
length of database: 11,685
effective HSP length: 29
effective length of query: 164
effective length of database: 10,873
effective search space: 1783172
effective search space used: 1783172
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 128 (54.3 bits)
BLASTX 2.1.2 [Oct-19-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AW065700 614058G02.y1
(667 letters)
Database: mypept
28 sequences; 11,685 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
gi|3522943|gb|AAC34225.1| (AC004411) putative ABC transporter [A... 202 3e-55
gi|6899925|emb|CAB71875.1| (AL138651) P-glycoprotein-like proeti... 201 5e-55
gi|7268566|emb|CAB80675.1| (AL161493) P-glycoprotein-like protei... 197 1e-53
gi|4558551|gb|AAD22644.1|AC007138_8 (AC007138) P-glycoprotein-li... 197 1e-53
gi|2739309|emb|CAA75922.1| (Y15990) P-glycoprotein-like protein ... 197 1e-53
>gi|3522943|gb|AAC34225.1| (AC004411) putative ABC transporter [Arabidopsis thaliana]
Length = 1286
Score = 202 bits (508), Expect = 3e-55
Identities = 99/117 (84%), Positives = 110/117 (93%)
Frame = +1
Query: 25 ANAHKFISSALQGYDTVVGERGAQLSGGQKQRVAIARAIVKDPRILLLDEATSALDAESE 204
+NAH FIS QGYDT+VGERG QLSGGQKQRVAIARAIVKDP++LLLDEATSALDAESE
Sbjct: 1158 SNAHGFISGLQQGYDTMVGERGIQLSGGQKQRVAIARAIVKDPKVLLLDEATSALDAESE 1217
Query: 205 RIVQDALDRVMVNRTTVIVAHRLSTIQNADLIAVVRNGVIIEKGKHDALINIKDGAY 375
R+VQDALDRVMVNRTT++VAHRLSTI+NAD+IAVV+NGVI+EKGKHD LINIKDG Y
Sbjct: 1218 RVVQDALDRVMVNRTTIVVAHRLSTIKNADVIAVVKNGVIVEKGKHDTLINIKDGVY 1274
Score = 174 bits (437), Expect = 6e-47
Identities = 84/117 (71%), Positives = 100/117 (84%)
Frame = +1
Query: 25 ANAHKFISSALQGYDTVVGERGAQLSGGQKQRVAIARAIVKDPRILLLDEATSALDAESE 204
ANA KF+ QG DT+VGE G QLSGGQKQR+A+ARAI+KDPRILLLDEATSALDAESE
Sbjct: 499 ANASKFVDKLPQGLDTMVGEHGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESE 558
Query: 205 RIVQDALDRVMVNRTTVIVAHRLSTIQNADLIAVVRNGVIIEKGKHDALINIKDGAY 375
R+VQ+ALDR+MVNRTTV+VAHRLST++NAD+IAV+ G I+EKG H L+ +GAY
Sbjct: 559 RVVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHQGKIVEKGSHTELLKDPEGAY 615
>gi|6899925|emb|CAB71875.1| (AL138651) P-glycoprotein-like proetin [Arabidopsis thaliana]
Length = 1292
Score = 201 bits (506), Expect = 5e-55
Identities = 99/117 (84%), Positives = 110/117 (93%)
Frame = +1
Query: 25 ANAHKFISSALQGYDTVVGERGAQLSGGQKQRVAIARAIVKDPRILLLDEATSALDAESE 204
+NAH FIS QGYDT+VGERG QLSGGQKQRVAIARAIVKDP++LLLDEATSALDAESE
Sbjct: 1164 SNAHGFISGLQQGYDTMVGERGVQLSGGQKQRVAIARAIVKDPKVLLLDEATSALDAESE 1223
Query: 205 RIVQDALDRVMVNRTTVIVAHRLSTIQNADLIAVVRNGVIIEKGKHDALINIKDGAY 375
R+VQDALDRVMVNRTTV+VAHRLSTI+NAD+IAVV+NGVI+EKGKH+ LINIKDG Y
Sbjct: 1224 RVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGKHETLINIKDGVY 1280
Score = 175 bits (440), Expect = 3e-47
Identities = 86/117 (73%), Positives = 100/117 (84%)
Frame = +1
Query: 25 ANAHKFISSALQGYDTVVGERGAQLSGGQKQRVAIARAIVKDPRILLLDEATSALDAESE 204
ANA KFI QG DT+VGE G QLSGGQKQR+A+ARAI+KDPRILLLDEATSALDAESE
Sbjct: 518 ANASKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESE 577
Query: 205 RIVQDALDRVMVNRTTVIVAHRLSTIQNADLIAVVRNGVIIEKGKHDALINIKDGAY 375
RIVQ+ALDR+MVNRTTV+VAHRLST++NAD+IAV+ G I+EKG H L+ +GAY
Sbjct: 578 RIVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHQGKIVEKGSHSELLRDPEGAY 634
>gi|7268566|emb|CAB80675.1| (AL161493) P-glycoprotein-like protein pgp3 [Arabidopsis thaliana]
Length = 1229
Score = 197 bits (495), Expect = 1e-53
Identities = 99/117 (84%), Positives = 109/117 (92%)
Frame = +1
Query: 25 ANAHKFISSALQGYDTVVGERGAQLSGGQKQRVAIARAIVKDPRILLLDEATSALDAESE 204
ANAH FISS QGYDTVVGERG QLSGGQKQRVAIARAIVK+P+ILLLDEATSALDAESE
Sbjct: 1101 ANAHGFISSIQQGYDTVVGERGIQLSGGQKQRVAIARAIVKEPKILLLDEATSALDAESE 1160
Query: 205 RIVQDALDRVMVNRTTVIVAHRLSTIQNADLIAVVRNGVIIEKGKHDALINIKDGAY 375
R+VQDALDRVMVNRTTV+VAHRLSTI+NAD+IAVV+NGVI+EKG H+ LINI+ G Y
Sbjct: 1161 RVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGTHETLINIEGGVY 1217
Score = 166 bits (416), Expect = 2e-44
Identities = 82/117 (70%), Positives = 99/117 (84%)
Frame = +1
Query: 25 ANAHKFISSALQGYDTVVGERGAQLSGGQKQRVAIARAIVKDPRILLLDEATSALDAESE 204
ANA FI +G +T+VGE G QLSGGQKQR+AIARAI+KDPRILLLDEATSALDAESE
Sbjct: 463 ANAANFIDKLPRGLETLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 522
Query: 205 RIVQDALDRVMVNRTTVIVAHRLSTIQNADLIAVVRNGVIIEKGKHDALINIKDGAY 375
R+VQ+ALDRVM++RTTVIVAHRLST++NAD+IAV+ G I+E+G H L+ +GAY
Sbjct: 523 RVVQEALDRVMMSRTTVIVAHRLSTVRNADMIAVIHRGKIVEEGSHSELLKDHEGAY 579
>gi|4558551|gb|AAD22644.1|AC007138_8 (AC007138) P-glycoprotein-like protein [Arabidopsis thaliana]
Length = 1229
Score = 197 bits (495), Expect = 1e-53
Identities = 99/117 (84%), Positives = 109/117 (92%)
Frame = +1
Query: 25 ANAHKFISSALQGYDTVVGERGAQLSGGQKQRVAIARAIVKDPRILLLDEATSALDAESE 204
ANAH FISS QGYDTVVGERG QLSGGQKQRVAIARAIVK+P+ILLLDEATSALDAESE
Sbjct: 1101 ANAHGFISSIQQGYDTVVGERGIQLSGGQKQRVAIARAIVKEPKILLLDEATSALDAESE 1160
Query: 205 RIVQDALDRVMVNRTTVIVAHRLSTIQNADLIAVVRNGVIIEKGKHDALINIKDGAY 375
R+VQDALDRVMVNRTTV+VAHRLSTI+NAD+IAVV+NGVI+EKG H+ LINI+ G Y
Sbjct: 1161 RVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGTHETLINIEGGVY 1217
Score = 166 bits (416), Expect = 2e-44
Identities = 82/117 (70%), Positives = 99/117 (84%)
Frame = +1
Query: 25 ANAHKFISSALQGYDTVVGERGAQLSGGQKQRVAIARAIVKDPRILLLDEATSALDAESE 204
ANA FI +G +T+VGE G QLSGGQKQR+AIARAI+KDPRILLLDEATSALDAESE
Sbjct: 463 ANAANFIDKLPRGLETLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 522
Query: 205 RIVQDALDRVMVNRTTVIVAHRLSTIQNADLIAVVRNGVIIEKGKHDALINIKDGAY 375
R+VQ+ALDRVM++RTTVIVAHRLST++NAD+IAV+ G I+E+G H L+ +GAY
Sbjct: 523 RVVQEALDRVMMSRTTVIVAHRLSTVRNADMIAVIHRGKIVEEGSHSELLKDHEGAY 579
>gi|2739309|emb|CAA75922.1| (Y15990) P-glycoprotein-like protein [Arabidopsis thaliana]
Length = 1229
Score = 197 bits (495), Expect = 1e-53
Identities = 99/117 (84%), Positives = 109/117 (92%)
Frame = +1
Query: 25 ANAHKFISSALQGYDTVVGERGAQLSGGQKQRVAIARAIVKDPRILLLDEATSALDAESE 204
ANAH FISS QGYDTVVGERG QLSGGQKQRVAIARAIVK+P+ILLLDEATSALDAESE
Sbjct: 1101 ANAHGFISSIQQGYDTVVGERGIQLSGGQKQRVAIARAIVKEPKILLLDEATSALDAESE 1160
Query: 205 RIVQDALDRVMVNRTTVIVAHRLSTIQNADLIAVVRNGVIIEKGKHDALINIKDGAY 375
R+VQDALDRVMVNRTTV+VAHRLSTI+NAD+IAVV+NGVI+EKG H+ LINI+ G Y
Sbjct: 1161 RVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGTHETLINIEGGVY 1217
Score = 166 bits (416), Expect = 2e-44
Identities = 82/117 (70%), Positives = 99/117 (84%)
Frame = +1
Query: 25 ANAHKFISSALQGYDTVVGERGAQLSGGQKQRVAIARAIVKDPRILLLDEATSALDAESE 204
ANA FI +G +T+VGE G QLSGGQKQR+AIARAI+KDPRILLLDEATSALDAESE
Sbjct: 463 ANAANFIDKLPRGLETLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 522
Query: 205 RIVQDALDRVMVNRTTVIVAHRLSTIQNADLIAVVRNGVIIEKGKHDALINIKDGAY 375
R+VQ+ALDRVM++RTTVIVAHRLST++NAD+IAV+ G I+E+G H L+ +GAY
Sbjct: 523 RVVQEALDRVMMSRTTVIVAHRLSTVRNADMIAVIHRGKIVEEGSHSELLKDHEGAY 579
Database: mypept
Posted date: Jan 12, 2001 5:58 PM
Number of letters in database: 11,685
Number of sequences in database: 28
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13049
Number of Sequences: 28
Number of extensions: 233
Number of successful extensions: 10
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 222
length of database: 11,685
effective HSP length: 29
effective length of query: 192
effective length of database: 10,873
effective search space: 2087616
effective search space used: 2087616
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 128 (54.3 bits)
BLASTX 2.1.2 [Oct-19-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AI783376 614011A09.x1
(577 letters)
Database: mypept
28 sequences; 11,685 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4006914|emb|CAB16844.1| (Z99708) serine C-palmitoyltransferas... 122 2e-31
>gi|4006914|emb|CAB16844.1| (Z99708) serine C-palmitoyltransferase like protein [Arabidopsis
thaliana]
Length = 475
Score = 122 bits (304), Expect = 2e-31
Identities = 57/80 (71%), Positives = 67/80 (83%)
Frame = +1
Query: 328 DEGVHWAVQNGLHLSRSTVVYFKHNDMASLASTLEKLTRGNKRAEKIRRYIVV*SIYQNS 507
DEGVHW +QNGL LSRST+VYFKHNDM SL TLEK+ KR++ +RRYIV ++YQNS
Sbjct: 199 DEGVHWGIQNGLQLSRSTIVYFKHNDMESLRITLEKIMTKYKRSKNLRRYIVAEAVYQNS 258
Query: 508 SQIAPLDEIVRLKEKYRFRL 567
QIAPLDEIV+LKEKYRFR+
Sbjct: 259 GQIAPLDEIVKLKEKYRFRV 278
Score = 102 bits (251), Expect = 3e-25
Identities = 44/55 (80%), Positives = 52/55 (94%)
Frame = +2
Query: 161 AAGPHTIVDGKEVVNFASTNYLGLIGNEKIIDSCISSLEKYGVGSCGPRGFYGTV 325
AAGPHT V+GK+VVNFAS NYLGLIG+EK+++SC S+LEKYGVGSCGPRGFYGT+
Sbjct: 99 AAGPHTTVNGKDVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
Database: mypept
Posted date: Jan 12, 2001 5:58 PM
Number of letters in database: 11,685
Number of sequences in database: 28
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11317
Number of Sequences: 28
Number of extensions: 244
Number of successful extensions: 2
Number of sequences better than 1.0e-10: 2
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 192
length of database: 11,685
effective HSP length: 29
effective length of query: 162
effective length of database: 10,873
effective search space: 1761426
effective search space used: 1761426
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 128 (54.3 bits)
BLASTX 2.1.2 [Oct-19-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AW076342 614065H02.y1
(273 letters)
Database: mypept
28 sequences; 11,685 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6691183|gb|AAF24521.1|AC007534_2 (AC007534) F7F22.4 [Arabidop... 79 6e-28
>gi|6691183|gb|AAF24521.1|AC007534_2 (AC007534) F7F22.4 [Arabidopsis thaliana]
Length = 813
Score = 79.2 bits (192), Expect(3) = 6e-28
Identities = 34/43 (79%), Positives = 41/43 (95%)
Frame = +3
Query: 69 KSVDPDRIILGKIVLTGYPQRVSKLKSIVRYMFHNPDDVKWFK 197
KSV+P++IIL KI+LTGYPQRVSK+K+ VRYMFHNP+DVKWFK
Sbjct: 682 KSVEPNKIILKKIILTGYPQRVSKMKASVRYMFHNPEDVKWFK 724
Score = 48.4 bits (113), Expect(3) = 6e-28
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = +1
Query: 199 PVELWTKHGRRGRIKETVGTHGAMK 273
PVE+W+K GRRGR+KE VGTHGAMK
Sbjct: 755 PVEVWSKCGRRGRVKEPVGTHGAMK 779
Score = 23.1 bits (48), Expect(3) = 6e-28
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +2
Query: 2 LPLIVLKNRDG-EQPAIAAV 58
LPL+VLK +G + PAIAA+
Sbjct: 659 LPLVVLKISEGSDPPAIAAL 678
Database: mypept
Posted date: Jan 12, 2001 5:58 PM
Number of letters in database: 11,685
Number of sequences in database: 28
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5636
Number of Sequences: 28
Number of extensions: 111
Number of successful extensions: 3
Number of sequences better than 1.0e-10: 2
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 91
length of database: 11,685
effective HSP length: 27
effective length of query: 63
effective length of database: 10,929
effective search space: 688527
effective search space used: 688527
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 124 (52.7 bits)