References

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Optimal spliced alignment of homologous cDNA to a genomic DNA template.
Bioinformatics 16, 203-211.

2. Usuka, J. and Brendel, V. (2000)
Gene structure prediction by spliced alignment of genomic DNA with protein sequences: Increased accuracy by differential splice site scoring.
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3. Brendel, V., Xing, L. and Zhu, W.
Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus.
Bioinformatics 20(7), 1157-1169 (2004).

4. Brendel, V. and Kleffe, J. (1998)
Prediction of locally optimal splice sites in plant pre-mRNA with applications to gene identification in Arabidopsis thaliana genomic DNA.
Nucl. Acids Res. 26, 4748-4757.

5. Brendel, V., Kleffe, J., Carle-Urioste, J.C. and Walbot, V. (1998)
Prediction of splice sites in plant pre-mRNA from sequence properties.
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6. Kleffe, J., Hermann, K., Vahrson, W., Wittig, B. and Brendel, V. (1996)
Logitlinear models for the prediction of splice sites in plant pre-mRNA sequences.
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