Sequence Assembly with CAP3 Program


Please enter sequences in FASTA format


Read the sequences from local file:



Please enter the quality values in FASTA format (optional)


Read the quality values from local file:



Please enter constraint values here (optional)


Read the constraint values from local file:



Please enter clipping information here (optional)


Read the clipping information from local file:





Parameters with default values


base quality cutoff for clipping (>5)




overlap length cutoff (>20)




overlap percent identity cutoff (>65)




overlap similarity score cutoff(>100)




clipping range (>5)




min no. of good reads at clip pos (>0)



Show Results via Result window Email, Email Address:



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